PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038292.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 442aa    MW: 49517 Da    PI: 4.5488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038292.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-351392302102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k++++++d+ +++++sw +  +sf+v+d++ef+k++LpkyFkh nf+SF+RQLn+YgFkk++ ++         weF++k F+ gk
  HL.SW.v1.0.G038292.1 139 FLNKTFQMVDDPGTESIVSWGQARDSFIVWDSHEFSKNLLPKYFKHCNFSSFIRQLNTYGFKKIDPDR---------WEFANKGFQGGK 218
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++ikr+++
  HL.SW.v1.0.G038292.1 219 KHLLKNIKRRSK 230
                           **********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-37135228IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-32135228IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-56135228IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-30139228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-17139162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-17177189IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340178202IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-17190202IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVAVADGGCA CYSPLSNTQL HKIWEAELND DVPLDENGHP LEPVLLASVK EEEEHVTSSS  60
SPTSDHPQLI PSPPSSPDGF VDDENKPSQL AKIKEEVIHN DVYENEQGDN IVNGGCSSTS  120
PLDFPVPMEG LHEAGPPPFL NKTFQMVDDP GTESIVSWGQ ARDSFIVWDS HEFSKNLLPK  180
YFKHCNFSSF IRQLNTYGFK KIDPDRWEFA NKGFQGGKKH LLKNIKRRSK YNRQLNEALT  240
LPMSDSAKSG LKSEIDTLKE DQSSLRTEIL NLRREQNNSQ CQITSAEERI RCAEFRQQQM  300
LLFLTKTILD SKFVHQLIHK RTQKKETIDA GQIAKRRRVL PCGEEQEQIT IQSIPAGKCP  360
ETENAPAPFV SSTEEESDGG SGSGSEVLSV YNVVSENLLD DTSFYDEELA VNDSTIYHEL  420
EDLIDEKHEE DWNAGFFGSI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-231082284129Heat shock factor protein 1
5d5v_B6e-231082284129Heat shock factor protein 1
5d5v_D6e-231082284129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227LKNIKRR
2334338KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090068.11e-140Heat stress transcription factor A-2
TrEMBLW9QJR81e-140W9QJR8_9R
STRINGGLYMA13G16510.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-76heat shock transcription factor A2